Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs12289619 | chr11:111182524 | A/G | 3.44E-5 | 412 | 5.03 | 14.97 | 16.97 | KM Plot |
| HNSC | rs12356360 | chr10:27480809 | C/A | 3.27E-7 | 408 | 16.2 | 16.5 | 3.13 | KM Plot |
| HNSC | rs12484557 | chr22:24555861 | A/G | 2.69E-6 | 412 | 16.3 | 17.07 | 8.63 | KM Plot |
| HNSC | rs12485143 | chr22:24575333 | C/T | 2.38E-6 | 411 | 16.3 | 18.17 | 8.63 | KM Plot |
| HNSC | rs1250129 | chr4:1254930 | C/T | 4.56E-6 | 412 | 17.33 | 15.73 | 9.17 | KM Plot |
| HNSC | rs12555342 | chr9:77769027 | C/T | 2.07E-5 | 412 | 17.1 | 14.27 | 10.87 | KM Plot |
| HNSC | rs12577187 | chr11:60567710 | G/A | 3.5E-5 | 405 | 16.23 | 16.75 | 2.83 | KM Plot |
| HNSC | rs1284857 | chr1:213041131 | G/A | 1.69E-5 | 411 | 16.15 | 19.72 | 5.03 | KM Plot |
| HNSC | rs1284858 | chr1:213043615 | T/C | 1.69E-5 | 411 | 16.15 | 19.72 | 5.03 | KM Plot |
| HNSC | rs1284861 | chr1:213092072 | C/T | 3.15E-5 | 408 | 16 | 20.48 | 5.03 | KM Plot |
| HNSC | rs12918773 | chr16:89741403 | G/A | 5.05E-7 | 402 | 16.27 | 17.4 | 5.33 | KM Plot |
| HNSC | rs12922197 | chr16:89744809 | G/C | 4.83E-7 | 403 | 16.27 | 16.22 | 5.33 | KM Plot |
| HNSC | rs12968447 | chr18:42816625 | T/G | 2.91E-5 | 408 | 16.92 | 13.07 | 4.3 | KM Plot |
| HNSC | rs13041814 | chr20:43369667 | C/T | 7.67E-6 | 406 | 16.4 | 14.87 | 4.2 | KM Plot |
| HNSC | rs13058561 | chr22:46090251 | A/C | 1.16E-5 | 412 | 0.8 | 19.25 | 15.73 | KM Plot |